ProteoAnnotator is a completely automated software pipeline for integration of mass spectrometry (MS) based proteomic evidence into genome databases. The goal is to use MS data for confirming that predicted gene models are translated into protein, and to verify the correctness of the existing gene models. It is also used to examine whether there is supporting evidence for alternative gene predictions at particular loci.
2 stage search:
In Developing ProteoAnnotator, we use the YourKit Java Profiler